PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G13680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 273aa MW: 28415.4 Da PI: 4.4202 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.8 | 1.9e-23 | 184 | 228 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e OBART07G13680.1 184 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 228 69************************************9998875 PP | |||||||
2 | QLQ | 54.2 | 4.3e-19 | 118 | 153 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k OBART07G13680.1 118 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 153 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 117 | 153 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 118 | 153 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-12 | 118 | 152 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.302 | 184 | 228 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 185 | 223 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GGEKVDREGE 60 AEEEEGKEDV EEGGVCKDLV LVEDAVPVED PEEAAATAAL QEEMKALVES VPVGAGAAFT 120 AMQLQELEQQ SRVYQYMAAR VPVPTHLVFP IWKSVTGASS EGAQKYPTLM GLATLCLDFG 180 KNPEPEPGRC RRTDGKKWRC WRNAIANEKY CERHMHRGRK RPVQLVVEDD EPDSTSGSKP 240 ASGKATEGGK KTDDKSSSSK KLAVAAPAAV EST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066400 | 0.0 | AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644678.1 | 1e-154 | growth-regulating factor 11 | ||||
Swissprot | Q6AWX8 | 1e-155 | GRF11_ORYSJ; Growth-regulating factor 11 | ||||
TrEMBL | A0A0D3GQR7 | 0.0 | A0A0D3GQR7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QAL3 | 0.0 | I1QAL3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0115500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART07G13680.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-29 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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