PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G13680.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 273aa    MW: 28415.4 Da    PI: 4.4202
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G13680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.81.9e-23184228145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  OBART07G13680.1 184 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 228
                      69************************************9998875 PP
2QLQ54.24.3e-19118153237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  OBART07G13680.1 118 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 153
                      8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8117153IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.922118153IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-12118152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.302184228IPR014977WRC domain
PfamPF088791.3E-19185223IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GGEKVDREGE  60
AEEEEGKEDV EEGGVCKDLV LVEDAVPVED PEEAAATAAL QEEMKALVES VPVGAGAAFT  120
AMQLQELEQQ SRVYQYMAAR VPVPTHLVFP IWKSVTGASS EGAQKYPTLM GLATLCLDFG  180
KNPEPEPGRC RRTDGKKWRC WRNAIANEKY CERHMHRGRK RPVQLVVEDD EPDSTSGSKP  240
ASGKATEGGK KTDDKSSSSK KLAVAAPAAV EST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0664000.0AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644678.11e-154growth-regulating factor 11
SwissprotQ6AWX81e-155GRF11_ORYSJ; Growth-regulating factor 11
TrEMBLA0A0D3GQR70.0A0A0D3GQR7_9ORYZ; Uncharacterized protein
TrEMBLI1QAL30.0I1QAL3_ORYGL; Uncharacterized protein
STRINGORGLA07G0115500.10.0(Oryza glaberrima)
STRINGOBART07G13680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]