PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G13150.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 525aa    MW: 55988.5 Da    PI: 3.7227
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G13150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM675.5e-21693187
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87
                     lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + +  + +e +fF++++ k+ +gkr++r +   g+W+ + 
  OBART07G13150.1  6 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFTEARAKNVKGKRQKRtVEGGGFWQGQR 93
                     79****************************99***************877777889********************555589**9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-21390IPR003441NAC domain
PROSITE profilePS5100519.2546172IPR003441NAC domain
PfamPF023654.6E-10795IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAAHGLPPGV RFDPADDELV SRYLLRRLRK QPIPLHGVIH EADPLGAPPW MLLADHGRGG  60
DEAFFFTEAR AKNVKGKRQK RTVEGGGFWQ GQRPSAVDCA ESAGQSFSGA IEPVFHDLPD  120
MMPEQADAGD TTETTAAVVN LTDAMSEQPV LPLAADGDDQ SSYGVIDPAF RDLADLIVLP  180
PEPDDGGMER ATPCTPMSET ALFEQQGPPL APGNADCADH QSSYGVIDPA FCEQADAGEA  240
ETTVSAAVVN QNYSMALCDF NFPEVLSYVD FTAGMEPSWQ QRWPPMSESA PFEQQEPPLA  300
PVAMVDLPPG NADCADHQSC SGVIDPAFRD LPDMTVLPPE QADTGGGAET TTAMVSLTDK  360
LKYSSSMDGE AAQAWCDFDF PESTDEALSY IDFTAGAHTD NDGGVSETAM FEQLGSPPQH  420
DPLPMDADGA DQSSSGPLID TVFRDHAEPI VLPLEQADTG GGAAAAVNLM DKQKYSSSMD  480
GEAAPAWCDS DFPESIDEVL SYIDVSTDDT SCIDFSMDDL FDLAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLA0A0D3GQK60.0A0A0D3GQK6_9ORYZ; Uncharacterized protein
STRINGOBART07G13150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-11NAC domain containing protein 41