PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G13140.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 662aa    MW: 69840.6 Da    PI: 3.6487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G13140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.59.3e-227102195
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                      lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + +  + +e +fF++++ k+ +gkr++r +   g+W+ + ++ +v 
  OBART07G13140.1   7 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFTEARAKNVKGKRQKRtVEGGGFWQGQRQSSAVD 100
                      79****************************99***************877777889********************555599***999998887 PP

              NAM  94 sk 95 
                      ++
  OBART07G13140.1 101 CA 102
                      64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-21396IPR003441NAC domain
PROSITE profilePS5100519.2547174IPR003441NAC domain
PfamPF023653.4E-10897IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAAAHGLPPG VRFDPADDEL VSRYLLRRLR KQPIPLHGVI HEADPLGAPP WMLLADHGRG  60
GDEAFFFTEA RAKNVKGKRQ KRTVEGGGFW QGQRQSSAVD CAESADQSFS GVIEPVFRDL  120
PDMMPEQADA GDTAETTAAV VNLTDAMTEQ LVLPLAADGD DQSSYGVIDP AFRDLADLMV  180
LPPVLAQQEP PLAPVAMVDL PPGNADCADH QSCSGVIDPA FRDLPDMTVL PPEQADTGGG  240
AETTTAMVSL TDKLKYSSSM DGEAAPAWCD FDFPESTDEV LSYINFTAGA HDNNDGSVGR  300
AAPWRPVSEI AMFEQPSAVD LPPGDADCTE SADQSFSGVI EPVFHDLPDM IREQADAGDT  360
AETTAAVVNQ NYSMALCDFD SGIDFTAGAH DSGMERATPW TPMSEAALFE QQGPPLAPAA  420
VVDLPPGNAD CADHQSSYGD MIVLPSEQAG AGGGAETTEA LFDQPVPPLA ADCANQGSYG  480
VIDPVFRDLA DLIVLPPEQA DAMDGEAAPA WCDFDFPENI DEALSYVDFT AGAHADNDGG  540
VSETAMFEQP GSPPQHDPLL MDADGADQSS SSGALIDTVF GDHAEPIVLP LEQADTGGGA  600
AAAVNLMDKQ KYSSSSMDGE EAPAWCDSDF PESIDEVLSY VDFSTDGASC DFSMDELFDL  660
AD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013010.0AK101301.1 Oryza sativa Japonica Group cDNA clone:J033033K06, full insert sequence.
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646406.10.0uncharacterized protein LOC4343147
TrEMBLA0A0D3GQK50.0A0A0D3GQK5_9ORYZ; Uncharacterized protein
STRINGOBART07G13140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-11NAC domain containing protein 41