PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G12230.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 202aa    MW: 23189.6 Da    PI: 10.0241
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G12230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-162973348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  OBART07G12230.1 29 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 73
                     7*****************************.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0842277IPR017930Myb domain
SMARTSM007175.5E-132675IPR001005SANT/Myb domain
CDDcd001672.00E-132973No hitNo description
Gene3DG3DSA:1.10.10.601.9E-192985IPR009057Homeodomain-like
PfamPF002491.2E-142973IPR001005SANT/Myb domain
SuperFamilySSF466895.72E-2229104IPR009057Homeodomain-like
PROSITE profilePS500906.43574124IPR017877Myb-like domain
SMARTSM007170.007178126IPR001005SANT/Myb domain
CDDcd001670.0037981123No hitNo description
Gene3DG3DSA:1.10.10.601.7E-686124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQEVIMATP PLPPPPRARC VVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVARSMPRR  60
SARSCRDRWR HHLARDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG WTSRVMKHRW  120
RELRRSGFPL AAAARKEQAL AMVDNMVESE VDESDQSLPP PELQRSLADA LASSFGCCSL  180
AHDHAMDPLA GSLALGFACM AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1530120797MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-153012561156MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-153012561156MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-16301257102C-Myb DNA-Binding Domain
1msf_C9e-16301257102C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-125transcription factor MYB73
TrEMBLA0A0D3GQ961e-143A0A0D3GQ96_9ORYZ; Uncharacterized protein
STRINGOBART07G12230.11e-144(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-17myb domain protein 70