PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G12190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 271aa MW: 30616.3 Da PI: 5.3272 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.7e-21 | 56 | 107 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k OBART07G12190.1 56 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 107 579***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-21 | 44 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.73 | 49 | 109 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-18 | 51 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-16 | 51 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.93E-19 | 53 | 107 | No hit | No description |
Pfam | PF00046 | 2.5E-18 | 56 | 107 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.3E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDNGSQQESS DLHVHHLPIV SVIGVEDHTE EADDAAVDYH DDGSEGQDEV SNKRMKRHTD 60 DQIKHLESVF ERCTYLGGNQ RVELAKKLGM EERQVKFWFQ NRRTRKKVAT WVDKRFIIIQ 120 GGIAILNMMH DERQEGMWLQ EENDVLHAEN KVLKEAIWAN ICFTCGSPVV PAIPTVHHRY 180 LSFQNMRLAD ELQHATAVFN MVAQDADVGL PPVFPLTDVS PLPQFGFVTG NNQTSLVIDP 240 PSPSHSENQV STEFANSTST CPRLFILSGR T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004298 | 0.0 | AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09. | |||
GenBank | AP005690 | 0.0 | AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3GQ92 | 0.0 | A0A0D3GQ92_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G12190.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 2e-27 | homeodomain GLABROUS 1 |