PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G11340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25496.2 Da PI: 10.0512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.3e-17 | 77 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r+++g+f++ae Aa a+++a+++ +g OBART07G11340.1 77 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWIGTFDSAEAAAMAYDQAALSARG 126 57******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.0E-27 | 76 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 76 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-26 | 77 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-20 | 77 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.6E-8 | 77 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 77 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAEHFSHAGM YIGYTADAAA SSSSSSSSSS SSSSEMLRFD TRWPDETPAP SSVAGRRRSA 60 GGDHRQGRGQ TEAAAAFIGV RRRPWGRFAA EIRDSTRNGA RVWIGTFDSA EAAAMAYDQA 120 ALSARGAAAA LNFPVERVRE SLHALSLGAA GGSPVLALKR RHSKRKRRKK AELLAAAAAT 180 AATANATPQT RRISKSTELT TATTDEQKRF VVELEDLGAE YLEELLWLSE INGGSDHAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-24 | 67 | 136 | 5 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 165 | RRHSKRK |
2 | 163 | 168 | KRKRRK |
3 | 163 | 169 | KRKRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062612 | 0.0 | AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence. | |||
GenBank | AP005325 | 0.0 | AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646205.1 | 1e-167 | ethylene-responsive transcription factor 15 | ||||
Swissprot | Q8VYM0 | 4e-41 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A0D3GQ00 | 1e-169 | A0A0D3GQ00_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G11340.1 | 1e-169 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-22 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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