PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G09910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1379aa    MW: 155303 Da    PI: 6.7843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G09910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.43.2e-29151241185
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv++++rlv+p+++ae +       ++k +++ l++ed+ g+ W+++++y+++s++yvltkGW++Fv++ngL++gD+v F++ 
  OBART07G09910.1 151 FDKVVTPSDVGSLNRLVIPRQHAECYfprdvaANEKGGGVLLRFEDRAGKPWRFRYSYWNSSQSYVLTKGWSRFVRENGLNAGDTVSFYRG 241
                      89*********************888*****988889****************************************************54 PP
2WRKY24.45.9e-0813561377223
                       --SS-EEEEEEE--TT-SS-EE CS
             WRKY    2 dDgynWrKYGqKevkgsefprs 23  
                       dDg+nWrKYGqK++ gs++ rs
  OBART07G09910.1 1356 DDGWNWRKYGQKDILGSKYQRS 1377
                       8******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-38144245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-29148243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-24149240No hitNo description
SMARTSM010195.6E-23151255IPR003340B3 DNA binding domain
PfamPF023621.6E-26151242IPR003340B3 DNA binding domain
PROSITE profilePS5086314.79151256IPR003340B3 DNA binding domain
SuperFamilySSF520474.47E-24432596No hitNo description
Gene3DG3DSA:3.80.10.101.9E-22437592IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525404.21E-17612782IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.6E-11715810IPR002182NB-ARC
SuperFamilySSF520581.81E-378451068IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-149231054IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.81E-3711101329IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.0E-1111131322IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.804.8E-713451377IPR003657WRKY domain
PROSITE profilePS508119.93613501379IPR003657WRKY domain
SuperFamilySSF1182901.57E-613521377IPR003657WRKY domain
PfamPF031064.2E-513561377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MSGYWRRRRS RKPANLEAGN TEGEQREQAD HEILRASRNI SDGFSDPEDS IAASYPYRSN  60
SAGSFANYLG LDTFGSTLPA SSSLHTWGFR RATDPPDSDQ ISKSKTSAVG VGLDQDQGEE  120
PPPQAPGDAD DDVGGGGGDA AKVIIEKEHM FDKVVTPSDV GSLNRLVIPR QHAECYFPRD  180
VAANEKGGGV LLRFEDRAGK PWRFRYSYWN SSQSYVLTKG WSRFVRENGL NAGDTVSFYR  240
GATEATRDRL FIDSKRKMHH INRLFQLLVR VRTMVSSFGE AGSPPPPPNS PLSTAQNFTY  300
KALKDCLQDL LYYNLLSIMG RNHKSQSTSS RFACGMDAKI RYTIPKLDAL IQFPSLSLPD  360
PVLGTFAAAT LLSNCIFLCR GVLGIMGFLR SENMKEEHRM LQAPAFDDLN YSAQDRITRM  420
KEQTMPSSLS DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSFHMLSA LNLSCCYSLR  480
ALPDSLVCLY DLQILLLPFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLL PDSFVNLGSL  540
ENLNLSDCIR LKGIPQPFGN LRKLEYLNFA GCYRVDLHDS FTDLKRHLDL SRWWKYNRVH  600
TQCNLKSYRC LQQIIINRLL SDGFDEGDIT SEQSLTSICI FGESGTGKTE LLHEIYNDQM  660
IIEGFHLRIW INMCDEKRLL EKIIEFTTCA YCYDAPSSIL EETEHAGCGL DINNYHELTK  720
VGWKIVEKCG SNPLYIKALS GLLCHSETAL SEIDSLAGGI VPALRLCYDL LPSHLKQCFK  780
FCSLFPKDYV FVRHHIIQLW ISQGFVYPEE GSQPEDTGLQ YFNELFCRSF FQHCPFSNDH  840
GDKFVMHELF HDLARSISKD ESLSSEDPFF SLPENICHLS LVISDSNTVV LTKEHRHLQS  900
LMVVRRSASE YSSSFVPLLK ILGLNDLLMK CGFLRALNLS CTTIVDLPGS IGRMKHLRFL  960
AMNNTKIKSL PTEIGQLNAL QTLELKDCCC LIELPESTKN LTKLRHLDVQ KEPGNIHVSM  1020
PSGLGQLTDL QTLTVFNIGD DLSHCSIRDL KNLSGLRGHV HITGLQNITA GDDAKEANLV  1080
GKQFLQALTL EWCCSSEEME DEGDKETANQ VLQNLQPNTS IQELAIQNYP GNSFPNWIKD  1140
SGLCMLVSIT IDNSQDCNEI PYLGDLPCLK FLFIQKMYAV ENFGQRSNSL TTDGKHAPGF  1200
PSLEILNLWE MYSLQFWNGT RYGDFPQLRR LSISRCPKLS NLPPLISLLY LSFHCGDKLP  1260
ALSEFPSLKS LKIEGFQKLK SVSFCPEMPM LQKLEISDCK GLVSIDAPLL SVSNLKVVRC  1320
PKLHFGGSWL EGCLMWEEFK RDKCTIKYLL VKTMKDDGWN WRKYGQKDIL GSKYQRSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-451442571113B3 domain-containing transcription factor NGA1
5os9_B6e-451442571113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890240.0AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK3185810.0AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644838.10.0uncharacterized protein LOC4342906 isoform X2
TrEMBLA0A0D3GPI40.0A0A0D3GPI4_9ORYZ; Uncharacterized protein
STRINGOBART07G09910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-45B3 family protein