PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G07940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 217aa    MW: 24609.7 Da    PI: 10.8043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G07940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-11591999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-..EEEEEE-SS.SEE..EEEEE-S CS
               B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD..fvvFkldgr.sefelvvkvfrk 99
                      + +++ l +p   +++  +k   ++tl+l++ +g + +vk+     +++ ++t GWkeF ++ gLk g+  +vvF+   + s+ +l+v +f+k
  OBART07G07940.1  5 KTASQDYLPIPVAVTKASRLK--HGRTLKLMTAHGLKIRVKV--AEARDKLYMTIGWKEFIQETGLKMGEsrSVVFR---TlSKSRLNVIIFNK 91
                     566778888999999888888..4569***************..***********************8873369999...44677779998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.42192IPR003340B3 DNA binding domain
SMARTSM010190.0046192IPR003340B3 DNA binding domain
PfamPF023621.5E-9391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-15492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13892IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMTAHGLKI RVKVAEARDK LYMTIGWKEF  60
IQETGLKMGE SRSVVFRTLS KSRLNVIIFN KEGYSRCPIP DKAAKALINN QSSSAPSFST  120
KSTAPRHPSS TNVEESTKLN RTKTNTSNSA NTKRIVKDMC CYNKRMKLSS EVKNYVRDIA  180
QFLDYSSKFY IVTIKNIHEV RQGGKIFHLL SIYSLEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84YL31e-133Y7282_ORYSJ; Putative B3 domain-containing protein LOC_Os07g12820
TrEMBLA0A0D3GNW51e-159A0A0D3GNW5_9ORYZ; Uncharacterized protein
STRINGOBART07G07940.11e-160(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1825266