PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G05400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 964aa    MW: 103593 Da    PI: 6.6907
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G05400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-17378474199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k lt  dv+k++ +++pk+ a++      +++   ++ l+++d+sg++W ++++++ + ++  +++GW eF +angL +gD  vF+  +r +
  OBART07G05400.1 378 FVKPLTYTDVTKNR-FMVPKDDAAAGvlphiQLN--DDVPLRIKDLSGKEWAFNYTWKAHTRM--FRNGWMEFSNANGLVTGDNAVFM--RRGN 464
                      88999999999985.999*****88899966444..6778***************87777655..9**********************..5578 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +e+++ v+r+
  OBART07G05400.1 465 GEMFMAVRRT 474
                      8888888886 PP
2B352.59e-17777873199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k lt  dv+k++ +++pk+ a++      +++   ++ l+++d+sg++W ++++++ + ++  +++GW eF +angL +gD  vF+  +r +
  OBART07G05400.1 777 FVKPLTYTDVTKNR-FMVPKDDAAAGvlphiQLN--DDVPLRIKDLSGKEWAFNYTWKAHTRM--FRNGWMEFSNANGLVTGDNAVFM--RRGN 863
                      88999999999985.999*****88899966444..6778***************87777655..9**********************..5578 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +e+++ v+r+
  OBART07G05400.1 864 GEMFMAVRRT 873
                      8888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-19375476IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19376478IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493377475IPR003340B3 DNA binding domain
CDDcd100172.43E-15377469No hitNo description
PfamPF023628.7E-13378473IPR003340B3 DNA binding domain
SMARTSM010191.3E-10378475IPR003340B3 DNA binding domain
PfamPF065071.6E-5492559IPR010525Auxin response factor
SuperFamilySSF1019367.59E-19774875IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19775877IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493776874IPR003340B3 DNA binding domain
CDDcd100172.43E-15776868No hitNo description
PfamPF023628.7E-13777872IPR003340B3 DNA binding domain
SMARTSM010191.3E-10777874IPR003340B3 DNA binding domain
PfamPF065071.9E-5891958IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MPLPSCRRRE QRPRQSCFQN PECHLRLRAR QQRPPESAVQ STLSSSIYFS DHFVLTPPPF  60
QITPTSIQNS TWLPIPTSPA VAAPPLPRWS PASVASTARA RRPPLPSLLP SLCRRSPRRR  120
ARPLPAPPSN LGGVDGEGAP CAPPPSPIPA GPASSTVSAA SSAPATRDYL GGITGHRLGQ  180
EDDSGGHEYT SVSGIHVPSS SGVAFVSFGQ CPQEMISTDL RLGLGPIAAT APLQPPPPPA  240
AAAAAGSPSA TTPEPGHGEA TPTTSSSAQF QTQAQQVTRD MWMACAAPKS GRLPTVGSLV  300
YYFPDGHAEQ CLSRPQEPLP GRIFLCKVTD VRLGAAATNE ALATISLVPI AADDHAFQLQ  360
APADPDPAPA QSQSLVSFVK PLTYTDVTKN RFMVPKDDAA AGVLPHIQLN DDVPLRIKDL  420
SGKEWAFNYT WKAHTRMFRN GWMEFSNANG LVTGDNAVFM RRGNGEMFMA VRRTRNRPAP  480
FSVEEVIEAV WRAARREPFE VSYCSRQDGD EFVVPRDIVD DGLRARFAPG MAVNFVWAVE  540
DGKLPTIGPQ GEVISIENYA TAPATRDYLG GITGHRLGQE DDSGGHEYTS VSGIHVPSSS  600
GVAFVSFGQC PQEMISTDLR LGLGPIAATA PLQPPPPPAA AAAAGSPSAT TPEPGHGEAT  660
PTTSSSAQFQ TQAQQVTRDM WMACAAPKSG RLPTVGSLVY YFPDGHAEQC LSRPQEPLPG  720
RIFLCKVTDV RLGAAATNEA LATISLVPIA ADDHAFQLQA PADPDPAPAQ SQSLVSFVKP  780
LTYTDVTKNR FMVPKDDAAA GVLPHIQLND DVPLRIKDLS GKEWAFNYTW KAHTRMFRNG  840
WMEFSNANGL VTGDNAVFMR RGNGEMFMAV RRTRNRPAPF SVEEVIEAVW RAARREPFEV  900
SYCSRQDGDE FVVPRDIVDD GLRARFAPGM AVNFVWAVED GKLPTIGPQG EVISIENYAT  960
SIGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A7e-1927796219322Auxin response factor 1
4ldy_B7e-1927796219322Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.10.0B3 domain-containing protein Os07g0183700
SwissprotA3BH910.0Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA0A0D3GN260.0A0A0D3GN26_9ORYZ; Auxin response factor
STRINGOBART07G05400.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2628755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.19e-25auxin response factor 16