PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G05350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 665aa    MW: 72790.4 Da    PI: 7.1735
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G05350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-20119231199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegDf 79 
                      f+k+l+p+dv++++ lvlp     eh         +++++     ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D+
  OBART07G05350.1 119 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRDT 207
                      99***********9.9999774..5659999887666555..78999*********************************************** PP

                      EEEE....E-SSSEE..EEEEE-S CS
               B3  80 vvFk....ldgrsefelvvkvfrk 99 
                      vvF+     dg+ ++el+v+v+r+
  OBART07G05350.1 208 VVFMrrggGDGDGDGELLVGVRRA 231
                      ****7765566799999**99997 PP
2B376.72.7e-24435538197
                      EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+l+psdv ++     +++v+pk+ a+eh ++ + + +l+++d++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F++
  OBART07G05350.1 435 FDKKLSPSDVAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTDLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMR 526
                      89***********99998899**********776.455.9********************99999999*************************4 PP

                      -SSSEE..EEEEE CS
               B3  85 dgrsefelvvkvf 97 
                       +r ++e++v+v+
  OBART07G05350.1 527 -RRPGGEPLVGVR 538
                      .34*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-21113235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-14114230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-10117210No hitNo description
PROSITE profilePS508638.572118232IPR003340B3 DNA binding domain
PfamPF023627.1E-17119231IPR003340B3 DNA binding domain
SMARTSM010190.0031119232IPR003340B3 DNA binding domain
PfamPF065071.6E-5258333IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.102.3E-19429536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-16430537IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-14434538No hitNo description
SMARTSM010195.8E-6435541IPR003340B3 DNA binding domain
PfamPF023623.1E-14436538IPR003340B3 DNA binding domain
PROSITE profilePS5086310.179440541IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGTL VYYIPHGHIE QCAEDPALLL  60
SRLPDPIHPV PCTVADLVLD VDAESGEAYT TISLLPGSHD DTTARRQVPA HGEPGLRFFE  120
KQLSPADVTS NALVLPAGAE HVLPPLDIAA YQTARLFDVR DLRGKRFEFV HIWDKKRCRY  180
MLGDLGVNDN DGWRGFVKAK RLATRDTVVF MRRGGGDGDG DGELLVGVRR APRARGGHHP  240
RPGVEDNKVV SEVWLAMQGV TPFEVTYYPR EGTFEFVVSR DEYIGFSFSP FYPFVPGTTV  300
HLRMNPLQIA QSISGTVRTF DHLRPWRMLE VDWDQAASPI SYRIHRQVNS WQVLRQPQPA  360
ATTSAVRIRD AIVATPQVQI MAPPRPPPPT TTTGMVPSDD SYAMISLFPG DCYVTHRPLP  420
AARDPVGGQR EFCFFDKKLS PSDVAANGGG SGALFVIPKP SAAEHVLPRI PDLRVTDLQG  480
GRWEFGHTWS DADTDRRSSS HTLAAGWSAF VKAKRLCVGD TVIFMRRRPG GEPLVGVRLL  540
MNPDDARRRS QPPVYGTVRD VHSRSEWRML EVDWDRDSPL APTMNRRVNS WQVQPVQLAL  600
PPQGSDEEAA AATTSTAHAG DATTSAPSLA LQLQTMASSS SSSAPIIPSR GSAFRIVNPR  660
DGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-241733550372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0D3GN190.0A0A0D3GN19_9ORYZ; Auxin response factor
STRINGOBART07G05350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.44e-24auxin response factor 2