PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G03630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 198aa MW: 21949.8 Da PI: 10.5848 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 44.2 | 6.3e-14 | 133 | 172 | 3 | 43 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSR 43 p+YVNaKQ+++I++RR +Rak+e+e+++ ++srk OBART07G03630.1 133 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKTAATATA 172 9***************************.999998766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-5 | 129 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 15.911 | 130 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.0E-14 | 133 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 135 | 155 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEDTRILQNH HHQILAAGRQ LQQRHHFPAM PPERHHHPPP PAPGSPAMKF PIISGDSDLG 60 KDLKFHESSA PTIAAYSPLQ EYQGHFELAL GHSMVFTNFC NSEQSYGVYS PYGAQTMAGR 120 MLLPPAIATD VGPIYVNAKQ FNGIIRRRLA RAKAEREHRV SRSRKTAATA TAAASARRRL 180 LPLSIRRRTG SDSDSNSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005454 | 1e-115 | AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03. | |||
GenBank | AP014963 | 1e-115 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-115 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645550.1 | 1e-102 | nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0D3GMF9 | 1e-144 | A0A0D3GMF9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G03630.1 | 1e-144 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 6e-11 | nuclear factor Y, subunit A10 |