PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G03380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 386aa    MW: 40454.9 Da    PI: 9.3237
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G03380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1271.9e-39111484132
              TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.........eaesssssas 83 
                      +kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++     ++ +as++                   
  OBART07G03380.1  11 GKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAavaaaaappL--------- 95 
                      79************************************************************77666222222222221112222......... PP

              TCP  84 nsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                          +       ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   + 
  OBART07G03380.1  96 ----PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 148
                      ....0222223356777779999**************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3911144IPR005333Transcription factor, TCP
PROSITE profilePS5136932.1891169IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.408128145IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MELAGSNNKR GKDRHSKVYT AKGIRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK  60
AAAAAIDKLP SLDTASFPTH PASSAAVAAA AAPPLPHAER EQQQQLTKSG CSSTSETSKG  120
SVLSLSRSES RVKARERARE RSSAAAAAAS KDAGDDAATP TAPTAAPASS QAASFTELLT  180
GMAAANASPA DHKQQQAWQP MTVAAATADY IGFAAAAAAP HTQPRKSAAG HHSAMPHTFA  240
SPAPHLANIT PIAMAPAQHF TLTPAAAEHH AEMTHYSFDH FMPVHAAAAA AAAASTPAGG  300
DYNLNFSMSS GLVGVHSRGT LQSNSQSHLS SHHHHHHQQQ QQQQQQLQRL SAPLDAPNIP  360
FLFSPAAAPT AADTQFAAAL QLWDGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-321670155Putative transcription factor PCF6
5zkt_B8e-321670155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.11e-177transcription factor PCF6
TrEMBLA0A0D3GMD30.0A0A0D3GMD3_9ORYZ; Uncharacterized protein
STRINGOBART07G03380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-30TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2