PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G01880.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 498aa MW: 54018.6 Da PI: 6.0898

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G01880.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	424	459	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ OBART07G01880.2 424 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 459 4679*****************************885 PP
2	ELK	35.1	2.8e-12	379	400	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLl+KYsgyL+sL+qEFs OBART07G01880.2 379 ELKFQLLKKYSGYLSSLRQEFS 400 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03790	3.0E-17	1	36	IPR005540	KNOX1
SMART	SM01255	3.4E-14	1	38	IPR005540	KNOX1
SMART	SM01256	5.4E-30	41	92	IPR005541	KNOX2
Pfam	PF03791	1.2E-23	46	90	IPR005541	KNOX2
SMART	SM01255	6.8E-23	229	273	IPR005540	KNOX1
Pfam	PF03790	6.4E-22	231	271	IPR005540	KNOX1
SMART	SM01256	5.4E-30	276	327	IPR005541	KNOX2
Pfam	PF03791	1.2E-23	281	325	IPR005541	KNOX2
PROSITE profile	PS51213	11.401	379	399	IPR005539	ELK domain
SMART	SM01188	5.7E-7	379	400	IPR005539	ELK domain
Pfam	PF03789	3.4E-9	379	400	IPR005539	ELK domain
PROSITE profile	PS50071	12.892	399	462	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-19	400	473	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-13	401	466	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-27	404	463	IPR009057	Homeodomain-like
CDD	cd00086	3.94E-12	411	463	No hit	No description
Pfam	PF05920	1.6E-16	419	458	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	437	460	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001708	Biological Process	cell fate specification
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MAHPQYSALL AAYLDCQKVG APPEVLERLT ATAAKLDARP PGRHDARDPE LDQFMEAYCN 60 MLAKYREELT RPIDEAMEFL KRVESQLDTI AGGAHGGSGG GAGSARLLLA DGKSECVGSS 120 EDDMDPTRQL ELQEEEERES LAARSFGNLG GGGAGGSGKA AASSFLQLPL STAAAATAYY 180 GTPLALHQAA AAAGPSQYHG HGHPHHGGGH HHSKHGGAGG GEISAAEAES IKAKIMAHPQ 240 YSALLAAYLD CQKVGAPPEV LERLTATAAK LDARPPGRHD ARDPELDQFM EAYCNMLAKY 300 REELTRPIDE AMEFLKRVES QLDTIAGGAH GGSGGGAGSA RLLLADGKSE CVGSSEDDMD 360 PSGRENEPPE IDPRAEDKEL KFQLLKKYSG YLSSLRQEFS KKKKKGKLPK EARQKLLHWW 420 ELHYKWPYPS ETEKIALAES TGLDQKQINN WFINQRKRHW KPSEDMPFVM MEGFHPQNAA 480 ALYMDGPFMA DGMYRLGS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MAHPQYSALL AAYLDCQKVG APPEVLERLT ATAAKLDARP PGRHDARDPE LDQFMEAYCN  60
MLAKYREELT RPIDEAMEFL KRVESQLDTI AGGAHGGSGG GAGSARLLLA DGKSECVGSS  120
EDDMDPTRQL ELQEEEERES LAARSFGNLG GGGAGGSGKA AASSFLQLPL STAAAATAYY  180
GTPLALHQAA AAAGPSQYHG HGHPHHGGGH HHSKHGGAGG GEISAAEAES IKAKIMAHPQ  240
YSALLAAYLD CQKVGAPPEV LERLTATAAK LDARPPGRHD ARDPELDQFM EAYCNMLAKY  300
REELTRPIDE AMEFLKRVES QLDTIAGGAH GGSGGGAGSA RLLLADGKSE CVGSSEDDMD  360
PSGRENEPPE IDPRAEDKEL KFQLLKKYSG YLSSLRQEFS KKKKKGKLPK EARQKLLHWW  420
ELHYKWPYPS ETEKIALAES TGLDQKQINN WFINQRKRHW KPSEDMPFVM MEGFHPQNAA  480
ALYMDGPFMA DGMYRLGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:9869405}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF050181	0.0	AF050181.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646117.1	0.0	homeobox protein knotted-1-like 12
Swissprot	O65034	0.0	KNOSC_ORYSI; Homeobox protein knotted-1-like 12
Swissprot	O80416	0.0	KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBL	A0A0D3GLW4	0.0	A0A0D3GLW4_9ORYZ; Uncharacterized protein
STRING	OGLUM07G01740.1	0.0	(Oryza glumipatula)
STRING	ONIVA07G00730.1	0.0	(Oryza nivara)
STRING	ORGLA07G0017300.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-102	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
Sato Y, et al. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J., 1999. 18(4): p. 992-1002 [PMID:10022841] Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Nagasaki H,Sakamoto T,Sato Y,Matsuoka M Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell, 2001. 13(9): p. 2085-98 [PMID:11549765] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Yin H, et al. SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice. Planta, 2013. 237(1): p. 15-27 [PMID:22956125]