PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G01880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 619aa    MW: 68379.2 Da    PI: 6.9657
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G01880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-091892242055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  OBART07G01880.1 189 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 224
                      4679*****************************885 PP
2Homeobox29.11.7e-095455802055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  OBART07G01880.1 545 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 580
                      4679*****************************885 PP
3ELK34.83.6e-12144165122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK qLl+KYsgyL+sL+qEFs
  OBART07G01880.1 144 ELKFQLLKKYSGYLSSLRQEFS 165
                      9********************8 PP
4ELK34.83.6e-12500521122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK qLl+KYsgyL+sL+qEFs
  OBART07G01880.1 500 ELKFQLLKKYSGYLSSLRQEFS 521
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037903.9E-17136IPR005540KNOX1
SMARTSM012553.4E-14138IPR005540KNOX1
SMARTSM012565.4E-304192IPR005541KNOX2
PfamPF037911.7E-234690IPR005541KNOX2
PfamPF037894.3E-9144165IPR005539ELK domain
PROSITE profilePS5121311.401144164IPR005539ELK domain
SMARTSM011885.7E-7144165IPR005539ELK domain
PROSITE profilePS5007112.892164227IPR001356Homeobox domain
SuperFamilySSF466892.99E-19165238IPR009057Homeodomain-like
SMARTSM003894.4E-13166231IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27169228IPR009057Homeodomain-like
CDDcd000861.68E-11176228No hitNo description
PfamPF059202.1E-16184223IPR008422Homeobox KN domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
SMARTSM012556.8E-23350394IPR005540KNOX1
PfamPF037908.4E-22352392IPR005540KNOX1
SMARTSM012565.4E-30397448IPR005541KNOX2
PfamPF037911.7E-23402446IPR005541KNOX2
PfamPF037894.3E-9500521IPR005539ELK domain
SMARTSM011885.7E-7500521IPR005539ELK domain
PROSITE profilePS5121311.401500520IPR005539ELK domain
PROSITE profilePS5007112.892520583IPR001356Homeobox domain
SuperFamilySSF466892.99E-19521594IPR009057Homeodomain-like
SMARTSM003894.4E-13522587IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27525584IPR009057Homeodomain-like
CDDcd000861.68E-11532584No hitNo description
PfamPF059202.1E-16540579IPR008422Homeobox KN domain
PROSITE patternPS000270558581IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAHPQYSALL AAYLDCQKVG APPEVLERLT ATAAKLDARP PGRHDARDPE LDQFMEAYCN  60
MLAKYREELT RPIDEAMEFL KRVESQLDTI AGGAHGGSGG GAGSARLLLA DGKSECVGSS  120
EDDMDPSGRE NEPPEIDPRA EDKELKFQLL KKYSGYLSSL RQEFSKKKKK GKLPKEARQK  180
LLHWWELHYK WPYPSETEKI ALAESTGLDQ KQINNWFINQ RKRHWKPSED MPFVMMEGFH  240
PQNAAALYMD GPFMADGMYR LGSRMSFGNL GGGGAGGSGK AAASSFLQLP LSTAAAATAY  300
YGTPLALHQA AAAAGPSQYH GHGHPHHGGG HHHSKHGGAG GGEISAAEAE SIKAKIMAHP  360
QYSALLAAYL DCQKVGAPPE VLERLTATAA KLDARPPGRH DARDPELDQF MEAYCNMLAK  420
YREELTRPID EAMEFLKRVE SQLDTIAGGA HGGSGGGAGS ARLLLADGKS ECVGSSEDDM  480
DPSGRENEPP EIDPRAEDKE LKFQLLKKYS GYLSSLRQEF SKKKKKGKLP KEARQKLLHW  540
WELHYKWPYP SETEKIALAE STGLDQKQIN NWFINQRKRH WKPSEDMPFV MMEGFHPQNA  600
AALYMDGPFM ADGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0501810.0AF050181.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646117.10.0homeobox protein knotted-1-like 12
SwissprotO650340.0KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804160.0KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0D3GLW30.0A0A0D3GLW3_9ORYZ; Uncharacterized protein
STRINGOBART07G01880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-100KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]