PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G01750.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 492aa    MW: 53765.8 Da    PI: 8.8933
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G01750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12140196155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OBART07G01750.1 140 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 196
                      78*******************77776664346655.77******************98 PP
2AP247.64.2e-15241290355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OBART07G01750.1 241 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 290
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-14140205IPR016177DNA-binding domain
PfamPF008478.0E-10140196IPR001471AP2/ERF domain
CDDcd000182.22E-17140204No hitNo description
Gene3DG3DSA:3.30.730.109.5E-13141205IPR001471AP2/ERF domain
PROSITE profilePS5103217.359141204IPR001471AP2/ERF domain
SMARTSM003808.3E-23141210IPR001471AP2/ERF domain
PRINTSPR003672.3E-6142153IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18239299IPR016177DNA-binding domain
CDDcd000182.64E-23239300No hitNo description
Gene3DG3DSA:3.30.730.101.1E-18240298IPR001471AP2/ERF domain
PROSITE profilePS5103219.296240298IPR001471AP2/ERF domain
SMARTSM003801.9E-33240304IPR001471AP2/ERF domain
PfamPF008472.4E-10241290IPR001471AP2/ERF domain
PRINTSPR003672.3E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ HHQQQQHGLF  60
FPSVTTAAAA AAYGLAGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGMLLR  120
LLKQPVHHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQGGYDME  180
EKAARAYDLA ALKYWGPSTH INFPLEDYQE ELEEMKNMTR QEYVAHLRRK SSGFSRGASM  240
YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FSTQEEAAEA YDVAAIKFRG LNAVTNFDIT  300
RYDVDKIMAS NTLLPADLAR RNAATTTSKD DHSAAAAGAI VSVHSAADIA VVDTLWKATT  360
APRQQQQHHD DVVLSGADQA AFSVLHDLVA VDAAAAHHQQ QQQQHMSMSA ASSLVTSLSN  420
SREGSPDRGG GLSMLFAKPS PAVAASAQQQ ASTKLMAAPL PLGSWVSSPP ASARPPAVSI  480
AHMPLFAAWT DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882597.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3GLU90.0A0A0D3GLU9_9ORYZ; Uncharacterized protein
STRINGOBART07G01750.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-129AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]