PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G28140.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 451aa    MW: 49483.6 Da    PI: 4.9832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G28140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1665109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  OBART06G28140.1  65 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 109
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1659113IPR009057Homeodomain-like
PROSITE profilePS5129421.58560114IPR017930Myb domain
TIGRFAMsTIGR015574.3E-1663112IPR006447Myb domain, plants
SMARTSM007172.9E-1464112IPR001005SANT/Myb domain
PfamPF002491.7E-1465108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-1065105IPR009057Homeodomain-like
CDDcd001673.45E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASIPQLEEK DSSDLAINKG QSLDLVKSPL MMNDASATVT AMQPNEGMEE FPVKVRKPYT  60
ITKQREKWTE EEHDKFLEAL KLYGRSWRQI QEHIGTKTAV QIRSHAQKFF SKVVREPGSN  120
NAIEIPPPRP KRKPLHPYPR KCANSGSDAN PATAQLKLAP GSSSSGSDQE NGSPISVLSA  180
MQSDAFGSSV SNPSTRCTSP ASSDDGNNIP TFTSGEDNNV PCEPTVIDPS QSHKEIDQDR  240
KDVNNMSEED SLEEEVQETS LKLFGRTVVI PDPRKRSSSD PKHESEEQIS QPSNEEMLQA  300
SSSVGEIPAA YCAPNGWFMS YNSFPFQFGE SAADARIPPL HVWWPYYGFA PISHPRGLST  360
VMQQTEGSDE SDGGKSHSSE SSSDSGENVQ MTAPQSSRIV ESLGAIYVRD SGSSFELKPS  420
ANSAFVRVKP SNSGDEEVIR GFVPYKRCKF Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295230.0CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644385.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0D3GL310.0A0A0D3GL31_9ORYZ; Uncharacterized protein
TrEMBLI1Q6W00.0I1Q6W0_ORYGL; Uncharacterized protein
STRINGORGLA06G0287300.10.0(Oryza glaberrima)
STRINGOBART06G28140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-38MYB_related family protein