PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G27980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29145.2 Da PI: 6.2615 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.8 | 7.9e-18 | 20 | 83 | 2 | 66 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdk 66 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp ++ +e+ewyf + +d OBART06G27980.1 20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFRCAADP 83 59**************************9.99***************8778899*****998776 PP | |||||||
2 | NAM | 39.8 | 1.4e-12 | 84 | 115 | 97 | 128 |
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+glkktLv+y+grap+g+ktdWvm+eyrl OBART06G27980.1 84 KRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 115 5689**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.562 | 1 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-39 | 17 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 21 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD 60 PRELPGLARI GEREWYFRCA ADPKRLIGLK KTLVYYEGRA PRGTKTDWVM NEYRLPDAAA 120 IPDTMQLQMQ HDDMVLCKVY RKAVSLKELE QRVAMEELAR STTSSGTHNT GSPLQQDSSS 180 ISISSSSDAM KKEVVGVDEA SAAAHELVRP ATLSLPQLEV ARPQSGLEWM QEPFLTQLRS 240 PWMETWSPYY ASVLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-29 | 14 | 142 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CU406703 | 0.0 | CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643570.1 | 1e-176 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 4e-74 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D3GL12 | 0.0 | A0A0D3GL12_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G27980.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-55 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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