PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G26250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 340aa    MW: 36408.3 Da    PI: 4.7994
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G26250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.5e-16257293135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  OBART06G26250.1 257 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 293
                      ****977777***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.5E-8120156IPR010399Tify domain
PROSITE profilePS5132012.646120155IPR010399Tify domain
PfamPF062002.6E-10123155IPR010399Tify domain
PfamPF062037.8E-16182224IPR010402CCT domain
PROSITE profilePS5101713.404182224IPR010402CCT domain
SMARTSM004011.5E-11251304IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091251299IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-12255314No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15256298IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.17E-14256306No hitNo description
PfamPF003208.1E-14257292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG  60
AEEEDEEEDE LEEEEEEMEE DEDAQHHEGV GGEVAVPMDA EAAAQLDPHG GMLAASGAVQ  120
PMASNQLTLS FQGEVYVFDS VSPDKVVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP  180
HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG  240
SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA  300
PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATANGHESST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882282.10.0GATA transcription factor 20
SwissprotQ5Z4U50.0GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0D3GKE50.0A0A0D3GKE5_9ORYZ; Uncharacterized protein
STRINGOBART06G26250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-72ZIM-LIKE 2