PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G25230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 698aa MW: 75674 Da PI: 7.7407 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.4e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ OBART06G25230.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 217 89****************************996555555..8999*********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ OBART06G25230.1 218 ENGDLCVGIRRA 229 88999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-37 | 118 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-28 | 124 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.41E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.999 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-32 | 290 | 373 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.401 | 612 | 695 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE 60 FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGATAAAAA 120 QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL 240 PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF 300 EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD 360 PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP 420 ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL 480 SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK 540 PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC 600 QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY 660 RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-78 | 20 | 394 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100322 | 0.0 | AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644137.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015644138.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0D3GK33 | 0.0 | A0A0D3GK33_9ORYZ; Auxin response factor | ||||
TrEMBL | I1Q4N2 | 0.0 | I1Q4N2_ORYGL; Auxin response factor | ||||
STRING | ORGLA06G0209500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART06G25230.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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