PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G22770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 211aa MW: 22959.1 Da PI: 11.4674 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.8 | 4.2e-07 | 110 | 152 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ OBART06G22770.1 110 RPRKKMRLPEIQQLVRSLTMENDGLREEMVALQRACTALSKEN 152 89***********************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-4 | 110 | 148 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGEEGRVSRR VVCHVQVVGR WARGSPGVSP RLQRRLRLRL RRVDERRRGR GLLLSTATTA 60 AGGDGDGGDY AHGRAHPFSG QAAAAAALVG PAGRRQLILP TPPPRPAGQR PRKKMRLPEI 120 QQLVRSLTME NDGLREEMVA LQRACTALSK ENCKLETRLE KSSKRNGTKS EGQQARPQPD 180 EPAAKQESQN GFVLPDLNLP VEDMAADGSA P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 115 | RPRKKMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 9e-92 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644355.1 | 6e-80 | uncharacterized protein LOC4341662 | ||||
TrEMBL | A0A0D3GJ93 | 1e-148 | A0A0D3GJ93_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G22770.1 | 1e-149 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |