PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G22270.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 424aa    MW: 44856.7 Da    PI: 6.8461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G22270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.5e-07951232755
              AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + k+++lg f+ta+ Aa+a+++a+ k++g
  OBART06G22270.1  95 CGKQVYLGGFDTAQAAARAYDQAAIKFRG 123
                      34************************997 PP
2AP240.66.4e-13166214153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  OBART06G22270.1 166 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 214
                      789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.31259131IPR001471AP2/ERF domain
SMARTSM003802.3E-1159137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1196131IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-996132IPR016177DNA-binding domain
PfamPF008479.0E-9166216IPR001471AP2/ERF domain
CDDcd000184.39E-24166226No hitNo description
SuperFamilySSF541714.38E-17166225IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-17167225IPR001471AP2/ERF domain
PROSITE profilePS5103214.987167224IPR001471AP2/ERF domain
SMARTSM003801.4E-32167230IPR001471AP2/ERF domain
PRINTSPR003672.5E-5168179IPR001471AP2/ERF domain
PRINTSPR003672.5E-5206226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAASSGPGRH  60
RGRRGGAPGP GARSIAVSPS TAAPAAGSPT FGQDCGKQVY LGGFDTAQAA ARAYDQAAIK  120
FRGVEADINF TLDDYKEDIK KMNNFSKEEF VQVLRRQGAG FVRGSSRFRG VTLHKCGKWE  180
ARIGQLMGKK YVYLGLYDTE MEAAKAYDKA AIKCCGKDAV TNFDTQAYED ELNLQSWDSE  240
LDLELSLGCS GGERAAGEVL HSAPSNQRTS LTFMLPEEEE MTACHRQRSI WARPSLAPAM  300
PDGGAVIRPD QHQHHPSSRN MLLMSQVISS SGGGGGSGRQ GAAELHMRPR HGWSSGGNNW  360
APPYAARPRL PGAEDDDDDD SAAAASSGFP MGQVATASSS SRPSSSSCSS RRSSTAAATA  420
TTGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A0D3GJ310.0A0A0D3GJ31_9ORYZ; Uncharacterized protein
STRINGOBART06G22270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-69AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]