PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G22080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 360aa    MW: 37703.6 Da    PI: 9.9597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G22080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.3e-1474126255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G r ++ +g+++AeIr     +   ++ r++lg+fgtaeeAa a++ a+  ++g
  OBART06G22080.1  74 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 126
                      8********.**********5...445588*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-2473135IPR001471AP2/ERF domain
CDDcd000181.05E-2374134No hitNo description
PROSITE profilePS5103220.49574134IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1774134IPR016177DNA-binding domain
PfamPF008472.1E-874122IPR001471AP2/ERF domain
SMARTSM003801.8E-2474140IPR001471AP2/ERF domain
PRINTSPR003672.2E-97586IPR001471AP2/ERF domain
PRINTSPR003672.2E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRPVKQKTT TWLGEINTDG LAALAAEAEG FAAANGEGWV APAVEGEGEG FVGAPVVEGE  60
EGLTAELPVA AERKYRGARK RPWGKYAAEI RIRNTMGVKE RVWLGTFGTA EEAAWAYDTA  120
ATVIHGDKAT TNFPRAPLRP ATTPVMRSML VFFGIAHLVR SLVPRARGPR GRGGGAGGRG  180
RSRRRRAAAA AAPSAPASEA PPPPPPPSSA LVPEPELQVQ GGRGERGRGR GRGRGGGRRG  240
RRGRGRTPAR VVAEDSPMLQ ATTPAAAPAL APAPANQAIF QPMIIPPGGG VVAPDDFLLS  300
AISDDEPVLP HKKPKLLGVY TPPDSPDQFV MEFFADLGDG DDILSSSFWQ DPAGDGEDTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1769134872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225234RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GJ060.0A0A0D3GJ06_9ORYZ; Uncharacterized protein
STRINGOBART06G22080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-13ERF family protein