PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G22040.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 621aa    MW: 63913.9 Da    PI: 4.5644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G22040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.9e-11121172156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr +    r+vAeI+ p+       r +lg+f+tae+ a a++aa++ l+ge
  OBART06G22040.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172
                      69********.8*********95....258************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-5121172IPR001471AP2/ERF domain
CDDcd000183.83E-19121178No hitNo description
SMARTSM003806.6E-18122186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-21122179IPR001471AP2/ERF domain
PROSITE profilePS5103217.701122179IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-15122179IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS  60
GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE  120
TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD  180
PAQAPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS  240
SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP  300
VQVPVPPPAA TAAAAAPVPK KRKLLTASTL SGSGGPRRGR RRVAEATFAG RGRGVWSGRR  360
RGRGRIPTEV TVGTPSPSAP TPAPASATAP LIQSNVVISP VPPTLAASSI AAWPPVPAIP  420
ELTTVAAAPL PEKPVLTAHD VVMATLFPNG VFSYTAGSSH APPPPPPPPP VASGSFFQEV  480
IPPGGVPTNY AIHEAPDFDP NVFFADVPDG EQDEPVLLSS TSTLLDIDNS LTLVADDAAS  540
SAQAAVDVAS SSAQAAIDVP SSSVLAVVDV PSSSAQAAID VPASSAQAAT DVASLSTQCA  600
AGNERPIVFV FDLNEPASNF E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881953.11e-138calphotin
TrEMBLA0A0D3GJ020.0A0A0D3GJ02_9ORYZ; Uncharacterized protein
STRINGOBART06G22040.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-12ERF domain protein 12