PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G14980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 128aa MW: 13769.7 Da PI: 5.224 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 27 | 5.4e-09 | 21 | 68 | 285 | 332 |
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 Er+ll++e + vvacega+ +erhe +++W +++e+ +++v ls++ OBART06G14980.1 21 EERVLLREETRGVVACEGAKLVERHEWARHWAAWMEADDMEQVGLSYS 68 699******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.9E-6 | 21 | 68 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MDHVRNSALA ALESGVAAPR EERVLLREET RGVVACEGAK LVERHEWARH WAAWMEADDM 60 EQVGLSYSGA MHGGEEAATE LQVGGAVRPW LLILLAHEAA LRRLRVAAGA VAPPPRSVIG 120 EPASCSID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065281 | 0.0 | AK065281.1 Oryza sativa Japonica Group cDNA clone:J013002M01, full insert sequence. | |||
GenBank | AP003520 | 0.0 | AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10. | |||
GenBank | AP004734 | 0.0 | AP004734.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616659.1 | 2e-13 | scarecrow-like protein 3 | ||||
Refseq | XP_015619625.1 | 2e-13 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3GGN9 | 7e-84 | A0A0D3GGN9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G14980.1 | 1e-84 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP38383 | 2 | 2 |