PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G12060.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 343aa MW: 38326.6 Da PI: 9.0069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G12060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ Fs++ L H+ H OBART06G12060.1 196 YMCKHCNEEFSTHQALGGHMAGH 218 89******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.13E-6	193	223	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-4	195	222	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.0E-7	196	221	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.596	196	223	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	198	219	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLIG YKGATPPLKM 60 SSTPSSSSPV IPAGSPPPQP PPSSSSSLRP VGDSNSSMPT PGISLTTYEK LAACVMLTLR 120 RRYDRDQRQL QAPPKLERAG AGDQLATNMV EGAEGSSRAI VRDEHEARRR KKGKRKLKEP 180 REEERKVKKE KKRHPYMCKH CNEEFSTHQA LGGHMAGHHK EKRILLKEKQ RERSLVLEKE 240 PERSHHLMEE KHPERGLILE KKQLERSSIV LKEKQPDKNL ILEEEQPEVV YQDKIDQTMN 300 WQKTERNEGA SYLGGGSNTA PIAQEDSRPP FGFDLNVEAP EQE

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLIG YKGATPPLKM  60
SSTPSSSSPV IPAGSPPPQP PPSSSSSLRP VGDSNSSMPT PGISLTTYEK LAACVMLTLR  120
RRYDRDQRQL QAPPKLERAG AGDQLATNMV EGAEGSSRAI VRDEHEARRR KKGKRKLKEP  180
REEERKVKKE KKRHPYMCKH CNEEFSTHQA LGGHMAGHHK EKRILLKEKQ RERSLVLEKE  240
PERSHHLMEE KHPERGLILE KKQLERSSIV LKEKQPDKNL ILEEEQPEVV YQDKIDQTMN  300
WQKTERNEGA SYLGGGSNTA PIAQEDSRPP FGFDLNVEAP EQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	176	RKKGKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006164	0.0	AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642158.1	1e-164	uncharacterized protein LOC107278701
TrEMBL	A0A0D3GFR1	0.0	A0A0D3GFR1_9ORYZ; Uncharacterized protein
STRING	OBART06G12060.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28