PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G10620.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 437aa    MW: 47135.5 Da    PI: 6.3654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G10620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09269317355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OBART06G10620.1 269 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 317
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17264334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10264321No hitNo description
PROSITE profilePS5088815.516266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-17267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6269317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNEKDATDLE ERSEASEHCQ ALSFHGGAMF LQEAQIASPA AANNALTSMA NPFPIPPGLW  60
NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG  120
IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG  180
GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK  240
SSGKQIKDNA GSPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT  300
GKAVMLDEII NYVQSLQRQV EFLSMKLASV NPTLDFNIER ILSKDIFQCR GTTASSAFGF  360
FPDIVHPRLH PPKYTQVGMP SIVNPTDAFG RVIHAPLGTN SAFKEPKHQM PNNLNGEFQD  420
VIEMPFTHDH HGSNDQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198KKRKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0D3GFA10.0A0A0D3GFA1_9ORYZ; Uncharacterized protein
TrEMBLI1Q7840.0I1Q784_ORYGL; Uncharacterized protein
STRINGORGLA06G0099500.10.0(Oryza glaberrima)
STRINGORGLA06G0299700.10.0(Oryza glaberrima)
STRINGOBART06G10620.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.39e-72bHLH family protein