PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G09580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 1077aa    MW: 116880 Da    PI: 7.8039
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G09580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.64.6e-07347364118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H Cq +CH+GpC++C
  OBART06G09580.1 347 CGNHACQDICHPGPCGEC 364
                      ****************** PP
2zf-NF-X122.82e-07405422118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  OBART06G09580.1 405 CGVHRCKVTCHEGDCPPC 422
                      ****************** PP
3zf-NF-X116.42e-05500518119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H Cq lCH G CppC 
  OBART06G09580.1 500 CGQHGCQLLCHSGHCPPCL 518
                      ******************6 PP
4zf-NF-X118.83.6e-06610626117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG+H C++ CH+ pC+p
  OBART06G09580.1 610 CGMHACNRSCHPSPCDP 626
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.87E-7116176No hitNo description
PROSITE profilePS5008911.058125165IPR001841Zinc finger, RING-type
CDDcd001620.0044125168No hitNo description
SMARTSM001849.9E-5125164IPR001841Zinc finger, RING-type
SMARTSM004380.023228246IPR000967Zinc finger, NF-X1-type
PfamPF014228230245IPR000967Zinc finger, NF-X1-type
CDDcd060087.61E-12273321No hitNo description
PfamPF014220.016283300IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0019283302IPR000967Zinc finger, NF-X1-type
CDDcd060083.94E-8337380No hitNo description
PfamPF014221.2E-4347364IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-4347366IPR000967Zinc finger, NF-X1-type
CDDcd060082.58E-13395443No hitNo description
PfamPF014225.4E-6405422IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001405424IPR000967Zinc finger, NF-X1-type
CDDcd060082.74E-8490542No hitNo description
PfamPF014220.0016500517IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2E-4500519IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62557575IPR000967Zinc finger, NF-X1-type
PfamPF014220.0024610626IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029610645IPR000967Zinc finger, NF-X1-type
PfamPF014228.8647673IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16654675IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MVCKNGSYLC NVISTTTGHP VFYLASPCGR LVLMKLLLVD LSFSSQLASY FVIICVIVAV  60
FYCFLKQLAE FSDTDHQTVR DQDARNNETE PILPRKRVVF SYGATEEQPE SSMCSSEDMC  120
SENVCKICYD APRSCFFIPC GHGFACFTCA RRIAEDKNQA CPICRRLIHR SVHAVPAREL  180
AYTCFCGRRR EPPNDLFLTP HSCGEPCSKP LEKADPAVKG DDAAATRCPH VCVLQCHPGP  240
CPPCKAFAPD RLCPCGKQTI VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC  300
NVLISARCFC GKKTETLLCG ETELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGP  360
CGECELMPGK VTACHCGKTR LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP  420
PCVVRVEQRC RCGSSGQMVE CYKVLEEEFR CNKPCGQKKN CGRHRCSECC CPLSKPLARL  480
EGGNWDPHLC QIPCGKKLRC GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC  540
GTPTPSCPHQ CLVPQPCGHP ATHQCHFGDC PPCVVPVMRE CIGGHVVLRN IPCGSKDIRC  600
NQPCGKNRQC GMHACNRSCH PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA  660
PCHPSSPCPD LRCEFPMTIA CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPMPLQPVE  720
SDGRRVPLGQ RKLSCDEDCA KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR  780
EPKWVMAIEE RCKFLVLGKT RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW  840
EPKRFITIHP TPKSKAPARI LGSKPGVSVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS  900
ALVLRFGGEC ELVWLNDKNA VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV  960
WVAGQKDGVA ATKSSANPWK KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS  1020
NRWNALESDA ATSSRPVEES KPAPRTDAVS SAGPSTAPPV SKMQPEVEVD DWEEACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D3GEY00.0A0A0D3GEY0_9ORYZ; Uncharacterized protein
STRINGOBART06G09580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1