PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G09260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 379aa    MW: 42413.5 Da    PI: 6.7005
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G09260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.73.4e-221376371
          E2F_TDP  3 eksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     eksL+ll+++f++l+ +++ + v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  OBART06G09260.1 13 EKSLGLLCTNFVALYDREDVESVGLDDAARRL---GV--ERRRIYDIVNVLESIGMLVRRAKNRYTWIG 76
                     79**************9999************...**..****************************98 PP
2E2F_TDP81.19.4e-26157237171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OBART06G09260.1 157 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 237
                      79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.2E-261176IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.37E-161275IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-231377IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.6E-201376IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-24154238IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-33157237IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-21158237IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-13159237IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAAAADAPPP PPEKSLGLLC TNFVALYDRE DVESVGLDDA ARRLGVERRR IYDIVNVLES  60
IGMLVRRAKN RYTWIGFGGV PAALAELKEM SLRAVSSVAS PSLDETSAAN VSDDEDDDKL  120
DDAEGDAESE KLSLSQSIDN PSDKPDAPPC KLRSEHRKEK SLGLLTQNFV KLFLTMEIET  180
ISLDEAAKRL LGEGHAANNM RTKVRRLYDI ANVLSSLNLI EKTQQADSRK PAFRWLGQAK  240
RNEGVTVALP PTKTLPNKRA FGTDLTNIDN KRGKLDSTME NRGKPTQDGG NLFNNLQRQL  300
GQENRSDFVY GPFHPAGARK QEHGNRTVQE KERKSIQDWE NLASSFRPQY QNPGLNDLFG  360
HYMEAWRSWY SDLRRDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-3792292228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
TrEMBLA0A0D3GEU50.0A0A0D3GEU5_9ORYZ; Uncharacterized protein
STRINGOBART06G09260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-98DP-E2F-like 1