PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G08210.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-PHD

Protein Properties

Length: 868aa MW: 95655.9 Da PI: 6.1411

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G08210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.2	2.2e-11	698	738	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++F++++yps++++e LA++lgLt +qV+ WF R OBART06G08210.1 698 NQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTR 738 589**********************************8776 PP
2	PHD	42.6	1.4e-14	323	378	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ + +++++lCdg C++ fH++Cl+++l e++p+g wlC+ C++k OBART06G08210.1 323 FCAACGSkdVTLKNDIILCDGiCDRGFHQYCLNPPLLAEDIPQGdeGWLCPACDCK 378 7****64445****88*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.55E-14	313	381	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.0E-13	319	377	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.941	321	378	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	7.3E-12	323	378	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	5.03E-26	323	375	No hit	No description
SMART	SM00249	2.4E-10	323	376	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	324	375	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.183	684	744	IPR001356	Homeobox domain
SMART	SM00389	7.1E-12	687	748	IPR001356	Homeobox domain
CDD	cd00086	2.37E-12	689	742	No hit	No description
SuperFamily	SSF46689	2.27E-11	689	751	IPR009057	Homeodomain-like
Pfam	PF00046	7.5E-9	698	738	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-12	698	753	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MANDNDGLAN DATRRLLLRR RRAAAVQSGG ARLKRRRTEG GARRRRRRAH GCGGAEDERD 60 NGGCARRRLT AVKAIICMDK TTTSDLVLDN DNIGSNAGSA QEPLTTNGKT SGVRNRYKQT 120 VKRGRKGSQI SPSKTYPLRS SHSNVRVLRS ASKKKNETPI VPTNDNTAVQ RVAKKRKRSK 180 PLRPAPSRVL RSTSEKKNKA HNELRNDGAG VQPAEKKRKV GRPPKGGTPK DDYLMIRKRV 240 RYVLNRMNYE QSLIQAYASE GWKGQSLEKI RPEKELERAK VEILRCKSRI REAFRNLDSL 300 LSEGKLDESM FDSAGEISSE DIFCAACGSK DVTLKNDIIL CDGICDRGFH QYCLNPPLLA 360 EDIPQGDEGW LCPACDCKID CIDVLNELQG VKLSIHDSWE KVFPEAASFL NGSKQIDASD 420 LPSDDSADND YDPTLAQGHK VDGEKSSGED GGEGLDSDDS SSEDSESSEK EKSKTSQNGR 480 TVDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQSDESD FTSDSDDFCA EIAKSCGQDE 540 ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL 600 YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH 660 TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA 720 QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV 780 DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE 840 KLIPGLENSD EARRKAVQRE LRKMKTGR

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MANDNDGLAN DATRRLLLRR RRAAAVQSGG ARLKRRRTEG GARRRRRRAH GCGGAEDERD  60
NGGCARRRLT AVKAIICMDK TTTSDLVLDN DNIGSNAGSA QEPLTTNGKT SGVRNRYKQT  120
VKRGRKGSQI SPSKTYPLRS SHSNVRVLRS ASKKKNETPI VPTNDNTAVQ RVAKKRKRSK  180
PLRPAPSRVL RSTSEKKNKA HNELRNDGAG VQPAEKKRKV GRPPKGGTPK DDYLMIRKRV  240
RYVLNRMNYE QSLIQAYASE GWKGQSLEKI RPEKELERAK VEILRCKSRI REAFRNLDSL  300
LSEGKLDESM FDSAGEISSE DIFCAACGSK DVTLKNDIIL CDGICDRGFH QYCLNPPLLA  360
EDIPQGDEGW LCPACDCKID CIDVLNELQG VKLSIHDSWE KVFPEAASFL NGSKQIDASD  420
LPSDDSADND YDPTLAQGHK VDGEKSSGED GGEGLDSDDS SSEDSESSEK EKSKTSQNGR  480
TVDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQSDESD FTSDSDDFCA EIAKSCGQDE  540
ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL  600
YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH  660
TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA  720
QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV  780
DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE  840
KLIPGLENSD EARRKAVQRE LRKMKTGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	47	KRRRTEGGARRRRRR
2	42	47	RRRRRR
3	173	178	KKRKRS
4	173	180	KKRKRSKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644127.1	0.0	homeobox protein HAZ1 isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0D3GEI1	0.0	A0A0D3GEI1_9ORYZ; Uncharacterized protein
STRING	OBART06G08210.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-86	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]