 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OBART06G07860.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 337aa MW: 37532.2 Da PI: 4.6812 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 82.3 | 3.1e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l +s
OBART06G07860.2 9 KRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
79********************************************9997 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 28.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.98E-36 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 3.4E-28 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRVKLQIKR IENIPNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR 60 RRIEDVLTRY INLPESDRGG YYLINMLTQL KCESDVTEDL TNTSSKAPVN SNIEELQQEI 120 RRCQHQMQLT EEQLRMFEPD PARSASMEDV EASEKFIAGI LSRVEERKRY LLCSMGSFDV 180 TASTSAMQHL YLPQQHQHGD ITSNGFGSDE VASWVSEGMP PTTSSVASIF AGTSDSMMSF 240 RDQAVYDTMR QDACVDHTVV PEMGMCHVDQ QNQSDDWQAY TSDTMGPMLA SSPLLMPGIH 300 DQQPPEEDMA TAGCSQAPAN NGNGLYAAED IAPVKVG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6bz1_A | 2e-16 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_B | 2e-16 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_C | 2e-16 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_D | 2e-16 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6c9l_A | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-16 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK111776 | 0.0 | AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence. | |||
| GenBank | FN663130 | 0.0 | FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015641968.2 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
| TrEMBL | A0A0D3GEE1 | 0.0 | A0A0D3GEE1_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART06G07860.1 | 0.0 | (Oryza barthii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G77980.1 | 4e-70 | AGAMOUS-like 66 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|