PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G07000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 269aa    MW: 28202.4 Da    PI: 4.9522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G07000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1767115355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  OBART06G07000.1  67 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 115
                      9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-2866124IPR001471AP2/ERF domain
PROSITE profilePS5103221.73366124IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1766126IPR016177DNA-binding domain
SMARTSM003809.0E-3266130IPR001471AP2/ERF domain
PRINTSPR003676.9E-96778IPR001471AP2/ERF domain
CDDcd000183.21E-1567125No hitNo description
PfamPF008472.0E-1067115IPR001471AP2/ERF domain
PRINTSPR003676.9E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAEATSKCQT RHTHTEQQQQ HQTARHNERS LAFQAIKRFD MVKTAASNGA AAARRVGGGG  60
DGKRAAYKGV RMRSWGSWVS EIRAPSQKTR IWLGSYSTAE AAARAYDAAL LCLKGSAAAD  120
LNFPVRLPFD LPAAAMSPKS IQRVAAAAAA NANANASSSC SAAVFAGVDD SGGASASEAS  180
TPACSSSDGA ASPSPVSSPE TVISDVDVDY SLLADIEAFF QSPKCMEYAM MDPCSAFFAP  240
PPPPAMAMEE ECGWEEEGDI ALWSFSSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1257124472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.11e-163ethylene-responsive transcription factor ERF014
TrEMBLA0A0D3GE350.0A0A0D3GE35_9ORYZ; Uncharacterized protein
STRINGOBART06G07000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-23ERF family protein