PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G06230.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 340aa    MW: 36434.3 Da    PI: 4.491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G06230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-181464155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +  +g+WvAeIr p++   rkr++lg+++++e+Aa+a +aa  +l+g
  OBART06G06230.1 14 TRYKGVRLRQ-WGKWVAEIRLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 64
                     68*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-111464IPR001471AP2/ERF domain
CDDcd000181.22E-251476No hitNo description
Gene3DG3DSA:3.30.730.105.6E-261576IPR001471AP2/ERF domain
SMARTSM003803.1E-311580IPR001471AP2/ERF domain
PROSITE profilePS5103222.0491574IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-191575IPR016177DNA-binding domain
PRINTSPR003672.7E-81627IPR001471AP2/ERF domain
PRINTSPR003672.7E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQANTTQPAP EKETRYKGVR LRQWGKWVAE IRLPNSRKRI WLGSYDSPEK AARAFDAAFI  60
CLRGGEAIAG LNFPESPPAV VARTTDPREV LAFATSHANL LSLLDAAIAQ EEEAHSFKKE  120
EEAQVEEKTA EESSDVVRAN AAPPPPVQVA GGSFDWSQLP LYSPTTTPAA EHWEEDNVEG  180
DIPVCSEMSV ETSSNSRYIG VVFQMHSYGR RGRSTPRSSA SAAAAPPTAA RTGDLREVYA  240
FAVSHANRPS AEAAPADIVV PAQVATEESD GVVRGNAAPP PVQVAAGNLD WSQFMANPPP  300
MYSPTATAGS QAMWPVTAPA AEADGEDDEL ATTCRWSFDA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GDT90.0A0A0D3GDT9_9ORYZ; Uncharacterized protein
STRINGOBART06G06230.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-31ERF family protein