PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G06220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20286.7 Da PI: 4.6425 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.8e-18 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr + +g+WvAeIr p++ r+r++lg+++++e+Aa+a +aa +l+g OBART06G06220.1 16 KYRGVRLRQ-WGKWVAEIRLPNS---RRRIWLGSYDSPEKAARAFDAAFICLRG 65 8*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-27 | 15 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.207 | 16 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-19 | 16 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-11 | 16 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-31 | 16 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.77E-27 | 16 | 77 | No hit | No description |
PRINTS | PR00367 | 4.4E-9 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MQANGTLPAP EKVMRKYRGV RLRQWGKWVA EIRLPNSRRR IWLGSYDSPE KAARAFDAAF 60 ICLRGGEAIA GLNFPESPPT VVARTSDPRE VLAYATLHAN RLSSDATIAQ EEAALLEEET 120 AEQFSDVVRA NAAPPPPPVQ VAGGSFDWSQ LPLYSPMTTP TAEHWEEDNV EATTSDNLWS 180 FDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 16 | 76 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642231.1 | 5e-60 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q9S7L5 | 1e-31 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0D3GDT8 | 1e-131 | A0A0D3GDT8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G06220.1 | 1e-132 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 2e-32 | ERF family protein |
Publications ? help Back to Top | |||
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