PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G06190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 208aa    MW: 22341.7 Da    PI: 4.5443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G06190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-181160255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  OBART06G06190.1 11 KYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 60
                     8******99.**********933...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-261075IPR001471AP2/ERF domain
SMARTSM003803.0E-281179IPR001471AP2/ERF domain
PfamPF008478.7E-111155IPR001471AP2/ERF domain
CDDcd000188.56E-231175No hitNo description
SuperFamilySSF541712.09E-181173IPR016177DNA-binding domain
PROSITE profilePS5103221.2321173IPR001471AP2/ERF domain
PRINTSPR003674.8E-101223IPR001471AP2/ERF domain
PRINTSPR003674.8E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSSSSATAR KYRGVRLRKW GKWVSEIRLP NSRERIWLGS YDTPEEAARA FDAAFVCLRG  60
GGAEAAGNGI NFPDSPPAVA RTSDPQEVYA AAVSHANNRP PPPPSARATS SALPWEEAPV  120
VAAQEAAADM APDVVVLPSS PVNVLAAAGS FEYWSQQPLY SPTAASLDLQ RWMTAAAAAE  180
ESIMEDDDDE GTSDGLWSFH YSPTRSKW
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.11e-127ethylene-responsive transcription factor ERF039
RefseqXP_025882167.11e-127ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0D3GDT51e-147A0A0D3GDT5_9ORYZ; Uncharacterized protein
STRINGOBART06G06190.11e-147(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-33ERF family protein