PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G05420.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 392aa MW: 38824.8 Da PI: 5.9242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G05420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	216	261	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OBART06G05420.1 216 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 261 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.26E-13	209	265	No hit	No description
SuperFamily	SSF47459	7.46E-17	209	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-16	213	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	216	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA 60 SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT 120 DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGSGG AGQPPFGQGG SMSGQSFGGP 180 AASGGTAPVT SSGGGGTGPP RQQRVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN 240 ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN SNGSSNGGGG 300 KASKGGTGGE GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL 360 ASAISSATSP AAMSNGDDPR HAKADSGAGG TQ

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA  60
SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT  120
DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGSGG AGQPPFGQGG SMSGQSFGGP  180
AASGGTAPVT SSGGGGTGPP RQQRVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN  240
ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN SNGSSNGGGG  300
KASKGGTGGE GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL  360
ASAISSATSP AAMSNGDDPR HAKADSGAGG TQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	225	RLRRER
2	306	321	TGGEGGGGGGGGGGGT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005919	0.0	AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D3GDJ9	0.0	A0A0D3GDJ9_9ORYZ; Uncharacterized protein
STRING	OBART06G05420.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-35	LJRHL1-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]