PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G00800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 422aa    MW: 45082.7 Da    PI: 4.7499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G00800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.6e-16308399698
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEE CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkv 96 
                       +s+ + + ++++p +f   h + ++e +t  + ++ g+sW   +  +++ ++  l +GW+eF+ +n+L +gD +vF+l+  g   + e+ v++
  OBART06G00800.1 308 AKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAtGGLEFQVQI 397
                      4566667799*******6..6666778889***************..*******************************7644555666677776 PP

                      E- CS
               B3  97 fr 98 
                      +r
  OBART06G00800.1 398 LR 399
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.15806.8E-7118249IPR000845Nucleoside phosphorylase domain
SuperFamilySSF531672.36E-3820237IPR000845Nucleoside phosphorylase domain
PfamPF010487.7E-2421247IPR000845Nucleoside phosphorylase domain
Gene3DG3DSA:2.40.330.101.8E-18298399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17299399IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-14301399No hitNo description
PROSITE profilePS5086313.042303401IPR003340B3 DNA binding domain
SMARTSM010198.7E-4303401IPR003340B3 DNA binding domain
PfamPF023625.1E-14306399IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000003Biological Processreproduction
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009116Biological Processnucleoside metabolic process
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0008930Molecular Functionmethylthioadenosine nucleosidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN  60
YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG  120
DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE  180
SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL  240
DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN  300
PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD  360
AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPSEVVTSK GLTSDQPILI  420
VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2h8g_A1e-11218250262585'-Methylthioadenosine Nucleosidase
2h8g_B1e-11218250262585'-Methylthioadenosine Nucleosidase
2qsu_A1e-11218250262585'-methylthioadenosine nucleosidase
2qsu_B1e-11218250262585'-methylthioadenosine nucleosidase
2qtg_A1e-11218250262585'-methylthioadenosine nucleosidase
2qtg_B1e-11218250262585'-methylthioadenosine nucleosidase
2qtt_A1e-11218250262585'-methylthioadenosine nucleosidase
2qtt_B1e-11218250262585'-methylthioadenosine nucleosidase
3lgs_A1e-11218250262585'-methylthioadenosine nucleosidases
3lgs_B1e-11218250262585'-methylthioadenosine nucleosidases
3lgs_C1e-11218250262585'-methylthioadenosine nucleosidases
3lgs_D1e-11218250262585'-methylthioadenosine nucleosidases
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1101650.0AB110165.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 12FPG037.
GenBankAF4580880.0AF458088.1 Oryza sativa methylthioadenosine/S-adenosyl homocysteine nucleosidase mRNA, complete cds.
GenBankAK0661720.0AK066172.1 Oryza sativa Japonica Group cDNA clone:J013056A05, full insert sequence.
GenBankAK1047970.0AK104797.1 Oryza sativa Japonica Group cDNA clone:001-039-H06, full insert sequence.
GenBankCT8328130.0CT832813.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021C21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643737.11e-1765'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2
TrEMBLA0A0D3GC010.0A0A0D3GC01_9ORYZ; Uncharacterized protein
STRINGOBART06G00800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP644155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-06related to vernalization1 1