PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART06G00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 40396.9 Da PI: 6.8001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.8 | 1.2e-54 | 17 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg OBART06G00240.1 17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 109 69****************************.99**************9557777664455778******************************* PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++++ ++ lvg++ktLv+y+grap+g+k+dW+mheyrle OBART06G00240.1 110 RDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 153 ******98434445****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-60 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 17 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-28 | 18 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW 60 DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH 120 SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETTETAPP QEEGWVVCRV FKKRLPTTRR 180 DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDQLQ 240 VPAAGHHLLN TMPHDLESST SSFHSLLVSP DHHQINMHHA QADPFFDDMH AVDQATTTDW 300 RVLDKFVASQ LSNDATNKPA DEGDILQVSD KQQEVAAVDY ASTSTSSSQI DPWK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-49 | 11 | 174 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN634076 | 0.0 | JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642963.1 | 0.0 | NAC domain-containing protein 105 | ||||
Refseq | XP_015642964.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | Q9FWX2 | 1e-104 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0D3GBT6 | 0.0 | A0A0D3GBT6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G00240.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12102 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12260.1 | 3e-94 | NAC 007 |
Publications ? help Back to Top | |||
---|---|---|---|
|