PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G27020.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 111aa    MW: 12343.6 Da    PI: 10.0299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G27020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082570244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g WT+   +++ +a + + ++   +W+ Iar+mg  +++ +++ ++
  OBART05G27020.1 25 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGAKSADEVRRHF 70
                     56*****************99*************889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.7E-62376IPR001005SANT/Myb domain
PfamPF002491.2E-52570IPR001005SANT/Myb domain
SuperFamilySSF466896.44E-112582IPR009057Homeodomain-like
CDDcd001673.96E-62770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MASAAGSKQQ QAMMSLPSSR GGGGGGWTQR QNKQFECALA VYDKETPDRW HNIARYMGGA  60
KSADEVRRHF DHLVEDVARI ESGRVPFPRY SSSSSSRGAD DGNRSRYLKY Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-2518111293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364520.0CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.19e-78protein RADIALIS-like 3
SwissprotQ1A1734e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D3GB876e-77A0A0D3GB87_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HIY86e-77A0A0E0HIY8_ORYNI; Uncharacterized protein
TrEMBLA2Y7V76e-77A2Y7V7_ORYSI; Uncharacterized protein
STRINGONIVA05G29080.11e-77(Oryza nivara)
STRINGOBART05G27020.11e-77(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-29RAD-like 6