PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G26790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 253aa MW: 28405.3 Da PI: 9.9139 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.8 | 3.8e-08 | 82 | 108 | 28 | 54 |
HHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRak 54 +e++eLA++l+L +qV WF NrR + OBART05G26790.1 82 KEKKELADRLNLRISQVDAWFRNRRLR 108 7899*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 9.28E-5 | 74 | 108 | No hit | No description |
SuperFamily | SSF46689 | 2.97E-6 | 75 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 81 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-5 | 82 | 108 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.928 | 82 | 112 | IPR001356 | Homeobox domain |
SMART | SM00340 | 1.3E-8 | 167 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLDL DRPYAREELP 60 QQGGSMETSH LRSRKLMEHF QKEKKELADR LNLRISQVDA WFRNRRLRGC EPNDSSKKAL 120 TSFHKQQYRS VSSVEQVQSS SSAPVTVMLL LAIPFRLIFT NLQSKQKSTE MECAYLKECF 180 NKLKEENHRL QLQVEQLRST SLQLQLQLQL HSERVATAPT GQQAGTSAAA RIFTLPLSGY 240 NPSRGTWFSP NAH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098571 | 1e-151 | AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence. | |||
GenBank | AP014961 | 1e-151 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638698.1 | 2e-93 | homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0D3GB61 | 0.0 | A0A0D3GB61_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G26790.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19065 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 3e-08 | homeobox-leucine zipper protein 18 |