PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G24340.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 399aa MW: 41162.8 Da PI: 8.6075

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G24340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.1e-06	295	335	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L OBART05G24340.1 295 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 335 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.259	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.68E-10	292	340	No hit	No description
SuperFamily	SSF47459	1.83E-12	292	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-9	295	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY 60 GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD 120 RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSRTRRRR 180 LVPRRTRKLP DEVPRQRRST KRAAGGSSSI TFGGGRHGAG AAAALLGLGR GYEPDTEAIA 240 QVKEMIYRAA AMRPVTLGGA ASASASDPSS AAPPPPQRPR RKNVRISSDP QTVAARLRRE 300 RVSERLRVLQ RLVPGGSKMD TATMLDEAAS YLKFLKSQLE ALETLGNGNG NGNLLHHGYY 360 TGSRNATATA ATGSSNSTVL AFGRDGLAGF VKSNRNLQL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSRTRRRR  180
LVPRRTRKLP DEVPRQRRST KRAAGGSSSI TFGGGRHGAG AAAALLGLGR GYEPDTEAIA  240
QVKEMIYRAA AMRPVTLGGA ASASASDPSS AAPPPPQRPR RKNVRISSDP QTVAARLRRE  300
RVSERLRVLQ RLVPGGSKMD TATMLDEAAS YLKFLKSQLE ALETLGNGNG NGNLLHHGYY  360
TGSRNATATA ATGSSNSTVL AFGRDGLAGF VKSNRNLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	281	RPRRK
2	295	300	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638480.1	0.0	transcription factor LATE FLOWERING
Swissprot	A0A0P0WQ90	0.0	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0D3GAB2	0.0	A0A0D3GAB2_9ORYZ; Uncharacterized protein
STRING	OBART05G24340.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-28	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]