PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G22710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 475aa    MW: 51912.6 Da    PI: 6.8768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G22710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM851.5e-26201573128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                      +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +tg
  OBART05G22710.1  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113
                      7************************7666779999**********733455532233777********************887679****5466 PP

              NAM  88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  OBART05G22710.1 114 KtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                      64435678777888999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.46318183IPR003441NAC domain
SuperFamilySSF1019417.72E-2719161IPR003441NAC domain
PfamPF023657.1E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE  60
PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQVSRL  180
FGSWIIVRGG GGEDIDEWAE ACAVFDLGPE TAEGSDNADA AAAAGDMRSA KQAGKRPVAA  240
AAVAEQPSKR PWLPPSPSTP CDGGPSQAMG NRQVPMQGLS LMHNFPPPPT TFCGHAPLQQ  300
GFPVHNNRAQ MRWPTMQHNC MPSPAHSFQP RPVQRRPVLV GQAPPQRRPV HHVGGHAPMH  360
MHQAQWTPVH IAQAPMQQLP FDDWVFDPFD DPPPPMQQLP VMMNNYQPQA PMQLPPMMNN  420
DQPAMVHGGE VQAPMQLLPA TTHGGEVQAP MPLNVYEEEQ RPSQEDGGQC TNAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-132115718140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-178pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A0D3G9S10.0A0A0D3G9S1_9ORYZ; Uncharacterized protein
STRINGOBART05G22710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-17NAC domain containing protein 35