PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART05G22490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 233aa MW: 24349.8 Da PI: 10.0292 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 63.4 | 8.7e-20 | 51 | 94 | 3 | 46 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk OBART05G22490.1 51 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSK 94 78*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.486 | 52 | 107 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.2E-18 | 52 | 94 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MISNNSTNEE LGGGGRKAAD QPSGGAAAVA SSRHWSASTE SRIVRVSRVF GGKDRHSKVR 60 TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKDGDKAA GGGGMKAFMS LSNSLGLLNA 120 ATMPATLAAH HHHHHHAAAY YAAAESWGNG GNGGHHHDVS HGVSPSAHNS PFPSLLSLAP 180 GSHHQFVFYS PEGGGFAVKE AAAEQFPVDS LDHSQGQLTL SSARSFLHSG SQG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC130604 | 0.0 | AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence. | |||
GenBank | AK069938 | 0.0 | AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | GQ229484 | 0.0 | GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637968.1 | 1e-112 | transcription factor TCP13 | ||||
TrEMBL | A0A0D3G9P7 | 1e-166 | A0A0D3G9P7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G22490.1 | 1e-167 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-27 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |