PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G21830.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 382aa    MW: 40776.3 Da    PI: 6.7071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G21830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.48.9e-133790255
             GRAS  2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55
                     ++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar  r
  OBART05G21830.1 37 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACR 90
                     699***********************************************9887 PP
2GRAS133.32.6e-41132380135374
             GRAS 135 RpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..............vakrledl..eleeLrvkpgEalaVnlvlq 209
                      Rp+g+p +RiT+ +   ++    + + +e+g rLa fA++ gv++efnv+              ++++l+++  ++ +L ++ gEa++Vn++  
  OBART05G21830.1 132 RPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLEFNVVesatttspkktsttLCQELASVlsDPPSLGLRDGEAVVVNCQSW 225
                      99*********9887555578889999***********************998888776655443344443367888889999*********** PP

             GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                      l ++       +++rd +L++v+ l+P +v+v++++ad++s+s++ r++ ++++++ l+d+l++++p++s  r   E++ +gr+i++v+  e  
  OBART05G21830.1 226 LRHVA------PDTRDLFLDTVRALNPCLVTVTDEDADLGSPSLASRMAGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDG 312
                      *9998......66789*********************************************************999999.**********9998 PP

             GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +  er e  ++  er+++ GF  v ++e+aa+++++ll++++  g+ v+ e++ lvl+Wk+++ v++ aW+
  OBART05G21830.1 313 A--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVRRLLSEHA-TGWGVKREDDMLVLTWKGHAAVFTGAWT 380
                      8..9**************************************.99*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.1531361IPR005202Transcription factor GRAS
PfamPF035143.1E-103790IPR005202Transcription factor GRAS
PfamPF035149.0E-39132380IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRIQQLL LHCAAALESN DVTLAQQAMW  60
VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPAGAP WSSGERPGDR RGGRAECRLG  120
RRTSTSTPWP PRPGGAPAIR ITVPSVRPAV PPLLAVSSSE LGARLAIFAK SKGVQLEFNV  180
VESATTTSPK KTSTTLCQEL ASVLSDPPSL GLRDGEAVVV NCQSWLRHVA PDTRDLFLDT  240
VRALNPCLVT VTDEDADLGS PSLASRMAGC FDFHWILLDA LDMSAPKDSP RRLEQEAAVG  300
RKIESVIGEE DGAERSEPGA RLAERMSRKG FAGVVFDEEA AAEVRRLLSE HATGWGVKRE  360
DDMLVLTWKG HAAVFTGAWT PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-233938290475Protein SHORT-ROOT
5b3h_B4e-233938136420Protein SHORT-ROOT
5b3h_E4e-233938136420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133320.0AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence.
GenBankAC1305970.0AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence.
GenBankAK0704890.0AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638716.10.0scarecrow-like protein 32
TrEMBLA0A0D3G9G60.0A0A0D3G9G6_9ORYZ; Uncharacterized protein
STRINGOBART05G21830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.16e-48GRAS family protein