PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G21370.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 289aa    MW: 32186 Da    PI: 4.9678
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G21370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.61.6e-196861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+  s +++++ + +++dfl d+v +
  OBART05G21370.1  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTVSSSHLKQCIHSYNVYDFLRDVVSK 86
                     5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-25372IPR009072Histone-fold
SuperFamilySSF471135.65E-20488IPR009072Histone-fold
PfamPF008082.3E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK  60
TVSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR  120
NEAASQTSTG RGRGRGRGRG RRGGRVSERE IIFSYEKFEN HEFPPGQFIK PSQLKVDVSV  180
DGTDAIETKE ATPLSNARAS LRNIDLNIEL TDYDDEGSAP LEVQPPAPAA GVVTISSGPL  240
VSEVNEEAKT KDFLGWQLPE LTKMAMDPVQ FALSSNHRLE EDEDYDNEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880480.0AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds.
GenBankAK0683200.0AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639312.10.0dr1-associated corepressor
TrEMBLA0A0D3G9B70.0A0A0D3G9B7_9ORYZ; Uncharacterized protein
TrEMBLI1PWV50.0I1PWV5_ORYGL; Uncharacterized protein
STRINGORGLA05G0185300.10.0(Oryza glaberrima)
STRINGOBART05G21370.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-55nuclear factor Y, subunit C11