PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G19950.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27631.1 Da PI: 4.9006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p + r kr++lg+fg+a +Aa a+++a+ ++ g OBART05G19950.4 67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASILG 115 9****998.**********8...3.35**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-29 | 66 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.101 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 66 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 67 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.63E-18 | 67 | 122 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-20 | 67 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-11 | 105 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1902600 | Biological Process | hydrogen ion transmembrane transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0015299 | Molecular Function | solute:proton antiporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA 60 KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILGPRAVL 120 NFPAFSPPAA AIAAPEQREP PFCSPATTAA ATAPEQRQTP GCSPAAVAGS GGGAVFEESD 180 VKPVVLPLPL PAILQGGGGT EAMAQHWDWE WDASWPELEM FECLDDIAMY LDVDAVMTTR 240 DCKVEELDAD IVDSLLWTLS D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 66 | 123 | 5 | 63 | ATERF1 |
3gcc_A | 1e-16 | 66 | 123 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102559 | 0.0 | AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638470.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
Refseq | XP_015638471.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q65WX1 | 0.0 | DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A0D3G8V5 | 0.0 | A0A0D3G8V5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G21040.2 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 5e-15 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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