PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G19950.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 22531.4 Da    PI: 4.8486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G19950.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1867113353
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                      y+GVr+++ +g+Wv+eIr+p   + r kr++lg+fg+a +Aa a+++a+ ++
  OBART05G19950.2  67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASI 113
                      9****998.**********8...3.35*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-2266132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2366113IPR001471AP2/ERF domain
PROSITE profilePS5103218.17666126IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1666113IPR016177DNA-binding domain
PfamPF008472.9E-1167112IPR001471AP2/ERF domain
PRINTSPR003672.6E-86778IPR001471AP2/ERF domain
CDDcd000182.20E-156799No hitNo description
PRINTSPR003672.6E-889105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015299Molecular Functionsolute:proton antiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA  60
KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILAVAGSG  120
GGAVFEESDV KPVVLPLPLP AILQGGGGTE AMAQHWDWEW DASWPELEMF ECLDDIAMYL  180
DVDAVMTTRD CKVEELDADI VDSLLWTLSD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025590.0AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
GenBankAK1038220.0AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence.
GenBankAK1098550.0AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655403.16e-55PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ65WX17e-53DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0D3G8V11e-148A0A0D3G8V1_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21040.21e-101(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-12ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]