PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G19200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 591aa MW: 65206.4 Da PI: 8.3763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l OBART05G19200.1 55 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 101 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 9.3e-19 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l OBART05G19200.1 107 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 153 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.3 | 2.6e-16 | 159 | 202 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ OBART05G19200.1 159 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 202 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.294 | 50 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 54 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 55 | 101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.02E-16 | 56 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 57 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.97E-14 | 58 | 101 | No hit | No description |
PROSITE profile | PS51294 | 30.661 | 102 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-31 | 104 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 106 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 107 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-15 | 109 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 110 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 157 | 208 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 158 | 206 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.856 | 158 | 208 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.0E-15 | 159 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-11 | 161 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MPAVKVEEEE EERNPVASSP SVSEGSAHAA AMASPTAADS IFGRRRKSGP VRRAKGGWTP 60 EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN 120 MVKKHGPKKW SVIARSLNGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL ARAHCMYGNK 180 WAEIAKLLPG RTDNSIKNHW NSSLRKKIDD YNTRDILPVH PPVVGDGLKQ LPKRPPADNH 240 FDLNKEPIIC SRDRLGVVHS DPTSHQRASN LKDFKGCADY LSLGQPVTSC EASAADDSAF 300 DLQGMRMDSV HDKGTGNNFV CGKVQGINFL GDKGLKINQI SDKMGCSRQA KREGEAAING 360 GGSSLQSEAH SVGSLCYQIP KMEDIAPAQS PVFTANYVPE HSRNVMHSPN GYTTPPTHGK 420 GSDQLSVESI LRSAAEKFHG TPSILRRRKR DKPTPAEDND LKIGRLSSDD FHTPIGKCTT 480 DSPQSFKTAA LLSLGPMDEQ GSLDVSPPYR LRSKRLAVLK TVQNHLDFSS DEMSICDTTM 540 KSACGNSGCA NASSGVSSIQ GKKLDEHMIG LETLTMNFAH TTKLDATQPN L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-69 | 54 | 208 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-69 | 54 | 208 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 452 | RRRKRDKP |
2 | 446 | 451 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106756 | 0.0 | AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637435.1 | 0.0 | transcription factor MYB3R-2-like | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D3G8K7 | 0.0 | A0A0D3G8K7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G19200.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-102 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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