PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G18640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 220aa MW: 23716.6 Da PI: 8.8163 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 8.8e-15 | 57 | 101 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky OBART05G18640.1 57 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 101 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.568 | 50 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-18 | 51 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-17 | 53 | 104 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 54 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-13 | 54 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.09E-12 | 57 | 102 | No hit | No description |
Pfam | PF00249 | 4.2E-12 | 57 | 101 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTHYDDLEND VCFIEAGLVP FPHYGAAGGG GGSGRSCYMV GGKRARGPDQ ERKKGVPWTE 60 EEHKLFLMGL KKYGRGDWRN ISRNFVTSRT PTQVASHAQK YFIRLNSGGK DKRRSSIHDI 120 TTVNLPDDDH GNPSPSPPPS VLTAHSSSSA AAVSEQFGML VDGKPPPPPL GRGAGHHHFM 180 PHPYAQVKIE AGNSHVAGGG RLDDSVLVQM QCGQLMQPLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068138 | 0.0 | AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637475.1 | 1e-134 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 5e-57 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D3G8D5 | 1e-162 | A0A0D3G8D5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G18640.1 | 1e-163 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-54 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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