PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G18540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 324aa    MW: 34699.9 Da    PI: 6.2618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G18540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17163210555
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  OBART05G18540.1 163 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 210
                      9*****.**********44465..***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.705160218IPR001471AP2/ERF domain
PRINTSPR003671.3E-7161172IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-20162219IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-26163219IPR001471AP2/ERF domain
SMARTSM003807.9E-29163224IPR001471AP2/ERF domain
CDDcd000186.18E-22163218No hitNo description
PfamPF008476.9E-12163210IPR001471AP2/ERF domain
PRINTSPR003671.3E-7184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT  60
SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD DAADISALME AASISCWTTN  120
GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SSDKEEAARP LIGVRKRPWG KYAAEIRDST  180
RNGARVWLGT FNTPEQAALA YDQAALSVRG PGAVLNYPLH RVRESLRTLE LGAAAAASES  240
PVLTLKRRHR IRKRSTTKKA PASKEADEAP ATTSSEGKKK RQVNTTSHSH DGKQDQTSSP  300
CVLELEDLGT DYLEELLALS EEQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22163220865ATERF1
3gcc_A1e-22163220865ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306020.0AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.10.0ethylene-responsive transcription factor ERF094
TrEMBLA0A0D3G8C40.0A0A0D3G8C4_9ORYZ; Uncharacterized protein
STRINGOBART05G18540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-38ethylene response factor 1