PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G18280.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 348aa MW: 37866.1 Da PI: 4.7298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G18280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.9e-06	212	231	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k F+r n++ H+ OBART05G18280.1 212 FVCHVCNKAFNRYNNMQMHM 231 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-5	208	235	No hit	No description
PROSITE profile	PS50157	10.388	212	239	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.8E-5	212	231	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50868	8.135	257	273	IPR003616	Post-SET domain
SuperFamily	SSF57667	5.97E-5	283	319	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-4	285	319	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVLRACTMVE GSSFVVGGGG GVPCCEENAP APAAPMQSPT AVLAAAVAVL LVDDYDVIVP 60 HRPTTTAWCW LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED 120 APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS 180 SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK 240 GPESLKGTQA TATLAMLKLP CYCCAAGCRN NVGHPRARPL KDFRTLQTHY KRKHGAKPFA 300 CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHLSASND

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVLRACTMVE GSSFVVGGGG GVPCCEENAP APAAPMQSPT AVLAAAVAVL LVDDYDVIVP  60
HRPTTTAWCW LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED  120
APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS  180
SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK  240
GPESLKGTQA TATLAMLKLP CYCCAAGCRN NVGHPRARPL KDFRTLQTHY KRKHGAKPFA  300
CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHLSASND

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102658	0.0	AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640742.1	0.0	protein TRANSPARENT TESTA 1 isoform X1
Refseq	XP_015640743.1	0.0	protein TRANSPARENT TESTA 1 isoform X2
Refseq	XP_015640744.1	0.0	protein TRANSPARENT TESTA 1 isoform X2
Swissprot	Q9SVY1	2e-90	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D3G889	0.0	A0A0D3G889_9ORYZ; Uncharacterized protein
STRING	OBART05G18280.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	9e-92	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]